tax4fun gobics.de

gobics.deTax4Fun

University of Göttingen. Institute of Microbiology and Genetics. Tax4Fun predicting functional profiles from metagenomic 16S rRNA data. Tax4Fun is a open-source R package that predicts the functional capabilities of microbial communities based on 16S datasets. Tax4Fun is applicable to output as obtained from the SILVAngs web server. Or the application of QIIME Caporaso et al., 2010. Against the SILVA database Quast et al., 2013. Klingenberg et al., 2013. Kanehisa et al., 2014. Zip, 93.0 kB. Pdf, 70.

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LINKS TO DOMAIN

Bowman Lab Marine microbial ecology

The Bowman Lab is located in the Integrative Oceanography Division at Scripps Institution of Oceanography. Our research explores many aspects of marine microbial ecology. We use sequence based approaches, flow cytometry, modeling, and other techniques to explore the structure and function of microbial communities, and to understand the role of microbes in the Earth system.

UProC - tools for ultra-fast protein sequence classification

UProC - tools for ultra-fast protein sequence classification. UProC command-line tools and C library. Section below you find the links for the corresponding database files that we have precompiled for import into UProC. Predicting functional profiles from metagenomic 16S rRNA data. Landesfeind, Manuel and Meinicke, Peter. International Journal of Molecular Sciences.

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gobics.deTax4Fun

DESCRIPTION

University of Göttingen. Institute of Microbiology and Genetics. Tax4Fun predicting functional profiles from metagenomic 16S rRNA data. Tax4Fun is a open-source R package that predicts the functional capabilities of microbial communities based on 16S datasets. Tax4Fun is applicable to output as obtained from the SILVAngs web server. Or the application of QIIME Caporaso et al., 2010. Against the SILVA database Quast et al., 2013. Klingenberg et al., 2013. Kanehisa et al., 2014. Zip, 93.0 kB. Pdf, 70.

PARSED CONTENT

The website states the following, "Institute of Microbiology and Genetics." We viewed that the web page also stated " Tax4Fun predicting functional profiles from metagenomic 16S rRNA data." It also said " Tax4Fun is a open-source R package that predicts the functional capabilities of microbial communities based on 16S datasets. Tax4Fun is applicable to output as obtained from the SILVAngs web server. Or the application of QIIME Caporaso et al. Against the SILVA database Quast et al."

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